&Model 

&width		36
&height		1
&numsides	6

&Network	Trap


&Genes

		&X
		//turns on dpp & tld
			&Location		cyto
			&Type			protein
			&Color			white
			&Show			off
		&endX
		
		&Y
		//turns on tsg
			&Location		cyto
			&Type			protein
			&Color			white
			&Show			off
		&endY

		&Z
		//turns on sog
			&Location		cyto
			&Type			protein
			&Color			white
			&Show			off
		&endZ

		&dpp
			&Location		cyto
			&Type			rna
			&Color			red
			&Show			off
		&enddpp

		&DPP
			&Location		membrane
			&Type			protein
			&Color			red
			&Show			on
		&endDPP

		&tsg
			&Location		cyto
			&Type			rna
			&Color			blue
			&Show			off
		&endtsg

		&TSG
			&Location		membrane
			&Type			protein
			&Color			blue
			&Show			on
		&endTSG
		
		&sog
			&Location		cyto
			&Type			rna
			&Color			cyan
			&Show			off
		&endsog
		
		&SOG
			&Location		membrane
			&Type			protein
			&Color			cyan
			&Show			on
		&endSOG

		&SUP
			&Location		membrane
			&Type			protein
			&Color			green
			&Show			on
		&endSUP

		&tld
			&Location		cyto
			&Type			rna
			&Color			yellow
			&Show			off
		&endtld
		
		&TLD
			&Location		membrane
			&Type			protein
			&Color			yellow
			&Show			off
		&endTLD

		&TKV
			&Location		membrane
			&Type			protein
			&Color			white
			&Show			on
		&endTKV
		
		&SUD
		//Sup and Dpp
			&Location		membrane
			&Type			complex
			&Color			magenta
			&Show			on
		&endSUD

		&SD
		//Sog and Dpp
			&Location		membrane
			&Type			complex
			&Color			magenta
			&Show			on
		&endSD

		&SG
		//Sog and Tsg
			&Location		membrane
			&Type			complex
			&Color			magenta
			&Show			on
		&endSG

		&DT
			&Location		membrane
			&Type			complex
			&Color			magenta
			&Show			on
		&endDT

		&DG
			&Location		membrane
			&Type			complex
			&Color			magenta
			&Show			on
		&endDG

		&rac
			&Location		cyto
			&Type			rna
			&Color			green
			&Show			on
		&endrac
	
		&rho
			&Location		cyto
			&Type			rna
			&Color			green
			&Show			on
		&endrho
&endGenes

&Interactions

		&dpp
			&Txn1Aff	X	 K_Xdpp		nu_Xdpp		H_dpp
			&DecayAff	dpp	H_dpp
		&enddpp

		&DPP
			&TlnAff	dpp	H_DPP			
			&Dimerize_AAff		DPP	SUP	r_SUD	max_SUP
			&Dimerize_AAff		DPP	TSG	r_DG	max_TSG
			&Dimerize_AAff		DPP	SOG	r_SD	max_SOG
			&Dimerize_AAff		DPP	TKV	r_DT	max_TKV
			&CleavageB_ECAff	SD	TLD	K_TLDSD   nu_TLDSD	C_SD
			&CleavageB_ECAff	DG	TLD	K_TLDDG	  nu_TLDDG	C_DG
			&LMxferEAff DPP LMxfer_DPP
			&LMxferIAff DPP LMxfer_DPP
			&MxferOutAff DPP Mxfer_DPP 
			&MxferInAff DPP Mxfer_DPP 
			&DecayAff	DPP	H_DPP
		&endDPP

		&sog
			&Txn1Aff	Y	K_Ysog	nu_Ysog	H_sog
			&DecayAff	sog	H_sog
		&endsog

		&SOG
			&TlnAff		sog	H_SOG
			&Dimerize_AAff		SOG	DPP	r_SD	max_DPP
			&Dimerize_AAff		SOG	TSG	r_SG	max_TSG
			&LMxferEAff SOG LMxfer_SOG
			&LMxferIAff SOG LMxfer_SOG
			&MxferOutAff SOG Mxfer_SOG 
			&MxferInAff SOG Mxfer_SOG
			&DecayAff	SOG	H_SOG
		&endSOG

		&tsg
			&Txn1Aff		Z	K_Ztsg	nu_Ztsg	H_tsg
			&DecayAff	tsg	H_tsg
		&endtsg

		&TSG
			&TlnAff	tsg	H_TSG
			&Dimerize_AAff		TSG	SOG	r_SG	max_SOG
			&Dimerize_AAff		TSG	DPP	r_DG	max_DPP
				//has to be a lot of TSG to get DG
			&LMxferEAff TSG LMxfer_TSG
			&LMxferIAff TSG LMxfer_TSG
			&MxferOutAff TSG Mxfer_TSG 
			&MxferInAff TSG Mxfer_TSG
			&DecayAff	TSG	H_TSG
		&endTSG

		&tld
			&Txn1Aff	X	K_Xtld	nu_Xtld	H_tld						
			&DecayAff	tld	H_tld
		&endtld

		&TLD
			&TlnAff		tld	H_TLD
			&LMxferEAff TLD LMxfer_TLD
			&LMxferIAff TLD LMxfer_TLD
			&MxferOutAff TLD Mxfer_TLD 
			&MxferInAff TLD Mxfer_TLD
			&DecayAff	TLD	H_TLD
		&endTLD

		&SUP
			&CleavageB_ECAff	SG	TLD	K_TLDSG	nu_TLDSG	C_SG
			&Dimerize_AAff		SUP	DPP	r_SUD	max_DPP
			&LMxferEAff SUP LMxfer_SUP
			&LMxferIAff SUP LMxfer_SUP
			&MxferOutAff SUP Mxfer_SUP 
			&MxferInAff SUP Mxfer_SUP
			&DecayAff	SUP	H_SUP
		&endSUP
	
		&TKV
			&Dimerize_AAff		TKV	DPP	r_DT	max_DPP
			&LMxferEAff TKV LMxfer_TKV
			&LMxferIAff TKV LMxfer_TKV
			&MxferOutAff TKV Mxfer_TKV 
			&MxferInAff TKV Mxfer_TKV
		&endTKV

		&SUD
			&Dimerize_BAff		SUP	DPP	r_SUD	max_SUP
			&DecayAff		SUD	H_SUD
		&endSUD

		&SD
			&Dimerize_BAff		DPP	SOG	r_SD	max_SOG
			&CleavageA_ECAff	SD	TLD	K_TLDSD   nu_TLDSD	C_SD
			&LMxferEAff SD LMxfer_SD
			&LMxferIAff SD LMxfer_SD
			&MxferOutAff SD Mxfer_SD 
			&MxferInAff SD Mxfer_SD	
			&DecayAff	SD	H_SD
		&endSD

		&DT
			&Dimerize_BAff		TKV	DPP	r_DT	max_TKV
			&LMxferEAff DT LMxfer_DT
			&LMxferIAff DT LMxfer_DT
			&MxferOutAff DT Mxfer_DT 
			&MxferInAff DT Mxfer_DT
			&DecayAff	DT	H_DT
		&endDT

		&DG
			&Dimerize_BAff		DPP	TSG	r_DG	max_TSG
			&CleavageA_ECAff	DG	TLD	K_TLDDG	nu_TLDDG	C_DG
			&LMxferEAff DG LMxfer_DG
			&LMxferIAff DG LMxfer_DG
			&MxferOutAff DG Mxfer_DG 
			&MxferInAff DG Mxfer_DG	
			&DecayAff		DG	H_DG
		&endDG
	
		&SG
			&CleavageA_ECAff	SG	TLD	K_TLDSG	nu_TLDSG	C_SG
//					think about recycling TSG from cleavage of SG
			&Dimerize_BAff		SOG	TSG	r_SG	max_TSG
			&LMxferEAff SG	 	LMxfer_SG
			&LMxferIAff SG 		LMxfer_SG
			&MxferOutAff SG 	Mxfer_SG
			&MxferInAff SG		Mxfer_SG	
			&DecayAff		SG	H_SG
		&endSG

		&rho
			&Txn1Aff		DT	K_DTrho	  nu_DTrho   H_rho	
			&DecayAff	rho	H_rho
		&endrho

		&rac
			&Txn1Aff		DT	K_DTrac	  nu_DTrac   H_rac
			&DecayAff	rac	H_rac
		&endrac

&endInteractions

&ParameterValues

				&H_dpp			20.0 	1.0 	100.0 	Linear
				&H_DPP			20.0 	1.0 	100.0 	Linear
				&H_sog			20.0 	1.0 	100.0 	Linear
				&H_SOG			20.0 	1.0 	100.0 	Linear
				&H_tsg			20.0 	1.0 	100.0 	Linear
				&H_TSG			20.0 	1.0 	100.0 	Linear
				&H_tld			20.0 	1.0 	100.0 	Linear
				&H_TLD			20.0 	1.0 	100.0 	Linear
				&H_SUP			20.0 	1.0 	100.0 	Linear
				&H_SD			20.0 	1.0 	100.0 	Linear
				&H_DG			20.0	1.0	100.0	Linear
				&H_SG			20.0 	1.0 	100.0 	Linear
				&H_SUD			20.0	1.0	100.0	Linear				
				&H_DT			20.0	1.0	100.0	Linear
				&H_rho			20.0	1.0	100.0	Linear
				&H_rac			20.0	1.0	100.0	Linear

				&K_Xdpp			0.01 	0.001	1.0 	Logarithmic
				&K_Ysog		  	0.01 	0.001 	1.0 	Logarithmic
				&K_Xtld			0.01 	0.001 	1.0 	Logarithmic
				&K_Ztsg			0.01 	0.001	1.0 	Logarithmic
				&K_TLDSD		0.001 	0.001	1.0 	Logarithmic
				&K_TLDDG		0.001	0.001	1.0	Logarithmic
				&K_TLDSG		0.001	0.001	1.0	Logarithmic
				&K_DTrho		0.05	0.01	1.0	Logarithmic
				&K_DTrac		0.9	0.1	1.0	Logarithmic
		
				&nu_Xdpp		2.0 	1.0 	10.0 	Linear
				&nu_Ysog		2.0 	1.0 	10.0 	Linear
				&nu_Xtld		2.0 	1.0 	10.0 	Linear
				&nu_Ztsg		2.0 	1.0 	10.0 	Linear
				&nu_TLDSD		2.0 	1.0 	10.0 	Linear
				&nu_TLDDG		2.0	1.0	10.0	Linear
				&nu_TLDSG		2.0	1.0	10.0	Linear
				&nu_DTrho		2.0	1.0	10.0	Linear
				&nu_DTrac		8.0	1.0	10.0	Linear

				&LMxfer_SOG		1	0.001	1.0	Logarithmic
				&LMxfer_TSG		1	0.001	1.0	Logarithmic								&LMxfer_SUP		1	0.001	1.0	Logarithmic
				&LMxfer_DPP		1	0.001	1.0	Logarithmic
				&LMxfer_TLD		1	0.001	1.0	Logarithmic
				&LMxfer_SD		1	0.001	1.0	Logarithmic
				&LMxfer_DG		1	0.001	1.0	Logarithmic
				&LMxfer_SG		0.1	0.001	1.0	Logarithmic
				&LMxfer_TKV		1	0.001	1.0	Logarithmic
				&LMxfer_DT		1	0.001	1.0	Logarithmic

				&Mxfer_SOG		1	0.1	1.0	Logarithmic
				&Mxfer_TSG		1	0.1	1.0	Logarithmic
				&Mxfer_SUP		1	0.1	1.0	Logarithmic
				&Mxfer_DPP		1	0.1	1.0	Logarithmic
				&Mxfer_TLD		1	0.1	1.0	Logarithmic
				&Mxfer_SD		1	0.1	1.0	Logarithmic
				&Mxfer_DG		1	0.1	1.0	Logarithmic
				&Mxfer_SG		0.1	0.1	1.0	Logarithmic
				&Mxfer_TKV		1	0.1	1.0	Logarithmic
				&Mxfer_DT		1	0.1	1.0	Logarithmic

				&r_SD			1.0E-3	1.0E-5	0.0010	Logarithmic
				&r_SUD			1.0E-3	1.0E-5	0.0010	Logarithmic
				&r_DT			1.0E-4	1.0E-5	0.0010	Logarithmic
				&r_DG			1.0E-3	1.0E-5	0.0010	Logarithmic
				&r_SG			1.0E-3	1.0E-5	0.0010	Logarithmic

				&max_DPP		1000.0		1000.0	1000000.0	Logarithmic
				&max_SOG		1000.0		1000.0	1000000.0	Logarithmic
				&max_TSG		1000.0		1000.0	1000000.0	Logarithmic
				&max_SUP		1000.0		1000.0	1000000.0	Logarithmic
				&max_TKV		100000.0		1000.0	1000000.0	Logarithmic

				&C_SD			0.1	0.01	1.0	Logarithmic
				&C_DG			0.1	0.01	1.0	Logarithmic
				&C_SG			0.1	0.01	1.0	Logarithmic

&endParameterValues

&InitLevels
				&BackgroundLevel		X		0.0
				&BackgroundLevel		Y		0.0
				&BackgroundLevel		Z		0.0
				&BackgroundLevel		sog		0.0
				&BackgroundLevel		SOG		0.0
				&BackgroundLevel		tld		0.0
				&BackgroundLevel		TLD		0.0
				&BackgroundLevel		tsg		0.0
				&BackgroundLevel		TSG		0.0
				&BackgroundLevel		dpp		0.0
				&BackgroundLevel		DPP		0.0	
				&BackgroundLevel		SUP		0.0
				&BackgroundLevel		TKV		1.0
				&BackgroundLevel		SUD		0.0
				&BackgroundLevel		SD		0.0
				&BackgroundLevel		SG		0.0
				&BackgroundLevel		DG		0.0
				&BackgroundLevel		DT		0.0
				&BackgroundLevel		rho		0.0
				&BackgroundLevel		rac		0.0

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	0
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	1
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	2
					&YPos	0
				&endIC

					&CellIC
					&Node	X
					&Value	1.0
					&XPos	3
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	4
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	5
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	6
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	7
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	8
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	2
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	3
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	4
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	5
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	6
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	7
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	8
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	9
					&YPos	0
				&endIC
				
				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	10
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	11
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	12
					&YPos	0
				&endIC
				
				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	13
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	14
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	21
					&YPos	0
				&endIC
				
				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	22
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	23
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	24
					&YPos	0
				&endIC
				
				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	25
					&YPos	0
				&endIC

				&CellIC
					&Node	Y
					&Value	1.0
					&XPos	26
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	27
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	28
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	29
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	30
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	31
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	32
					&YPos	0
				&endIC

				&CellIC
					&Node	Z
					&Value	1.0
					&XPos	33
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	27
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	28
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	29
					&YPos	0
				&endIC

					&CellIC
					&Node	X
					&Value	1.0
					&XPos	30
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	31
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	32
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	33
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	34
					&YPos	0
				&endIC

				&CellIC
					&Node	X
					&Value	1.0
					&XPos	35
					&YPos	0
				&endIC

&endInitLevels

&endNetwork